Angel \”Java\” Lopez on Blog

January 24, 2013

Bioinformatics: Links, News And Resources (2)

Filed under: Algorithms, Bioinformatics, Links — ajlopez @ 4:38 pm

Previous Post
Next Post

Data mining, forecasting and bioinformatics competitions on Kaggle
http://www.kaggle.com/

thebird.nl
http://thebird.nl/
Pjotr is a scientist/biologist/open source programmer,

BioTeam
http://bioteam.net/
BioTeam is a high-performance consulting practice. We are dedicated to delivering objective, technology agnostic solutions to the life science researchers. We leverage the right technologies customized to our client’s unique needs in order to enable them to reach their scientific objectives.

ANNOVAR website
http://www.openbioinformatics.org/annovar/annovar_db.html
Preparation of local annotation databases

biotoolbox – Tools for querying and analysis of genomic data
http://code.google.com/p/biotoolbox/

NCBI HomePage
http://www.ncbi.nlm.nih.gov/

Calling SNPs with Samtools
http://ged.msu.edu/angus/tutorials-2011/snp_tutorial.html

Cytoscape: An Open Source Platform for Complex Network Analysis and Visualizatio…
http://www.cytoscape.org/

ROCR: Classifier Visualization in R
http://rocr.bioinf.mpi-sb.mpg.de/

OpenWetWare
http://openwetware.org/wiki/Main_Page
OpenWetWare is an effort to promote the sharing of information, know-how, and wisdom among researchers and groups who are working in biology & biological engineering.

Circos
http://circos.ca/

DNA seen through the eyes of a coder
http://ds9a.nl/amazing-dna/

Ensembl
http://www.ensembl.org/index.html
The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online.

DNAnexus
https://dnanexus.com/
Powering the genomics revolution

Integrated system of aging biomarkers
http://www.sens.org/node/2223

Monte Carlo Method
http://en.wikipedia.org/wiki/Monte_Carlo_Method

The PubChem Project
http://pubchem.ncbi.nlm.nih.gov/

RCSB Protein Data Bank
http://www.rcsb.org/pdb/home/home.do

Welcome to BioConductor — bioconductor.org
http://www.bioconductor.org/

GoPubMed
http://www.gopubmed.org/

KEGG: Kyoto Encyclopedia of Genes and Genomes
http://www.genome.jp/kegg/

Entrez cross-database search
http://www.ncbi.nlm.nih.gov/sites/gquery

European Bioinformatics Institute
http://www.ebi.ac.uk/

UCSC Genome Browser Home
http://genome.ucsc.edu/

Uri Alon’s Molecular Cell Biology Lab
http://www.weizmann.ac.il/mcb/UriAlon/

the Gene Ontology
http://www.geneontology.org/

B.A.B.A
http://baba.sourceforge.net/
BABA is an applet that tries to explains how some basic algorithms of bioinformatics work.

Human Genome Project Information
http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml

Main Page – partsregistry.org
http://partsregistry.org/Main_Page
Collection of genetic parts that can be mixed and matched to build synthetic biology devices and systems.

Python course in Bioinformatics
http://www.pasteur.fr/recherche/unites/sis/formation/python/

BiologicalNetworks
http://biologicalnetworks.net/index.php

Vadlo
http://www.vadlo.com/
Life Sciences Search Engine

What is Quirrel?
http://whatisquirrel.com/index.html
Quirrel is a purely declarative query language designed for performing analytics and statistics on large-scale, multi-structured data sets.

Bioinformatica
http://www.bioinformatica.info/

My Links
http://delicious.com/ajlopez/bioinformatics

3 Comments »

  1. […] Next Post […]

    Pingback by Bioinformatics: Links, News and Resources (1) « Angel ”Java” Lopez on Blog — January 24, 2013 @ 4:43 pm

  2. […] Previous Post […]

    Pingback by Bioinformatics: Links, News And Resources (3) « Angel ”Java” Lopez on Blog — January 27, 2013 @ 3:37 pm

  3. Today, while I was at work, my sister stole my iphone and tested to see if it can survive a forty foot drop, just so she can be a youtube sensation.

    My apple ipad is now destroyed and she has 83 views. I know this is
    entirely off topic but I had to share it with someone!

    Comment by protein shake — September 16, 2013 @ 11:39 pm


RSS feed for comments on this post. TrackBack URI

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out / Change )

Twitter picture

You are commenting using your Twitter account. Log Out / Change )

Facebook photo

You are commenting using your Facebook account. Log Out / Change )

Google+ photo

You are commenting using your Google+ account. Log Out / Change )

Connecting to %s

Create a free website or blog at WordPress.com.

%d bloggers like this: