Category Archives: Bioinformatics

Bioinformatics: Links, News And Resources (4)

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Birds of a Feather: Functional Programming in Bioinformatics | Commercial Users of Functional Programming

Needleman Wunsch Algorithm in C# – CodeProject

BioSmalltalk: A pure object system and library for bioinformatics

L Fu – Dao: a novel programming language for bioinformatics

Homepage: Max-Planck-Institut für Informatik

Functional DSLs for Biocomputation

BioSmalltalk: How to do a BLAST from Smalltalk



Oxford Journals | Life Sciences & Mathematics & Physical Sciences | Bioinformatics

Cell – A Whole-Cell Computational Model Predicts Phenotype from Genotype

My Links

Keep tuned!

Angel “Java” Lopez

Bioinformatics: Links, News And Resources (3)

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bioinformatics – node.js modules

YOKOFAKUN: Server-side javascript: translating a DNA with Node.js


Karelman (Karelman) on Twitter

sbassi/DNAFilter · GitHub

Bioinformatics Web Servers – University of Reading

UCL-CS Bioinformatics: Introduction

Python for Bioinformatics – Sebastian Bassi – Google Books

Perl and Javascript: bioinformatics in a browser window

EMBER: Login

Web apps for bioinformatics | KurzweilAI

Bio-Javascript? – BioStar

bio-js – A bioinformatics framework in JavaScript – Google Project Hosting

The Sequence Manipulation Suite

biosmalltalk – Bioinformatics Library for Smalltalk – Google Project Hosting

BioSmalltalk: A pure object system for doing bioinformatics with Smalltalk – SEQanswers

My Links

Bioinformatics: Links, News And Resources (2)

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Data mining, forecasting and bioinformatics competitions on Kaggle
Pjotr is a scientist/biologist/open source programmer,

BioTeam is a high-performance consulting practice. We are dedicated to delivering objective, technology agnostic solutions to the life science researchers. We leverage the right technologies customized to our client’s unique needs in order to enable them to reach their scientific objectives.

ANNOVAR website
Preparation of local annotation databases

biotoolbox – Tools for querying and analysis of genomic data

NCBI HomePage

Calling SNPs with Samtools

Cytoscape: An Open Source Platform for Complex Network Analysis and Visualizatio…

ROCR: Classifier Visualization in R

OpenWetWare is an effort to promote the sharing of information, know-how, and wisdom among researchers and groups who are working in biology & biological engineering.


DNA seen through the eyes of a coder

The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online.

Powering the genomics revolution

Integrated system of aging biomarkers

Monte Carlo Method

The PubChem Project

RCSB Protein Data Bank

Welcome to BioConductor —


KEGG: Kyoto Encyclopedia of Genes and Genomes

Entrez cross-database search

European Bioinformatics Institute

UCSC Genome Browser Home

Uri Alon’s Molecular Cell Biology Lab

the Gene Ontology

BABA is an applet that tries to explains how some basic algorithms of bioinformatics work.

Human Genome Project Information

Main Page –
Collection of genetic parts that can be mixed and matched to build synthetic biology devices and systems.

Python course in Bioinformatics


Life Sciences Search Engine

What is Quirrel?
Quirrel is a purely declarative query language designed for performing analytics and statistics on large-scale, multi-structured data sets.


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Bioinformatics: Links, News and Resources (1)

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Bioinformatics has many interesting problems, algorithms and software, related to parallelism, distributed computing, scalability, and algorithms. This is my first list of links about this fascinating topic, more lists are coming.

Bioinformatics and the Future of Hadoop
The Future of Hadoop in Bioinformatics |

Clojure or Scala for bioinformatics/biostatistics/medical research – Stack Overflow

Riding the Elephant | The Molecular Ecologist

Protein Structure Methods and Algorithms

HPCwire: Scientists Ratchet Up Understanding of Cellular Protein Factory

Molecular Animation – Where Cinema and Biology Meet

Microsoft Research Makes Microsoft Biology Foundation and MODISAzure-Based Environmental Service

Bioinformatics Programming Using Python

Computer gamers crack protein-folding puzzle

Mapreduce and Hadoop Algorithms in Bioinformatics Papers | Abhishek Tiwari
Gamers beat algorithms at finding protein structures

Nature paper decision | Foldit

Microsoft Biology Foundation 1.0 Released – Parallel Programming with .NET

The Molecular Programming Project – Caltech – U

Boris Schmid, PhD

Research field: Biological Sciences – Bioinformatics
Theoretical / Systems Biology: modeling of evolution, population dynamics, epidemiology, immunology, virology, networks.

bioinformatics toolkit in clojure: what would that look like? – Clojure | Google Groups

Saaien Tist: Encounter with incanter – about clojure, incanter and bioinformatics

Paul W.K. Rothemund
I am interested in how processes in biology and chemistry can actually act as computers and execute molecular algorithms

Python and databases (Mysql and SQLite) « Python for Bioinformatics

DataAllure: Hadoop for DNA sequence analysis

Multi-core Parallelization in Clojure – a Case Study

Hadoop for Bioinfomatics – Deepak Singh on Vimeo

Analyzing Human Genomes with Hadoop » Cloudera Hadoop & Big Data Blog

My Links:

Angel “YesIHaveAGenoma” Lopez 🙂